Summary

Name KDM1A
Full Name Lysine-specific histone demethylase 1A
Synonyms BRAF35-HDAC complex protein BHC110, Flavin-containing amine oxidase domain-containing protein 2 | AOF2, KDM1, KIAA0601, LSD1
Primary ID O60341
Links - -
Type protein
Relations 20
Function Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context (PubMed:15620353, PubMed:15811342, PubMed:16140033, PubMed:16079794, PubMed:16079795, PubMed:16223729). Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed (PubMed:15620353, PubMed:15811342, PubMed:16079794, PubMed:21300290). Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me (PubMed:15620353, PubMed:20389281, PubMed:21300290, PubMed:23721412). May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity (PubMed:16140033, PubMed:16079794, PubMed:16885027, PubMed:21300290, PubMed:23721412). Also acts as a coactivator of androgen receptor (AR)-dependent transcription, by being recruited to AR target genes and mediating demethylation of H3K9me, a specific tag for epigenetic transcriptional repression. The presence of PRKCB in AR-containing complexes, which mediates phosphorylation of 'Thr-6' of histone H3 (H3T6ph), a specific tag that prevents demethylation H3K4me, prevents H3K4me demethylase activity of KDM1A (PubMed:16079795). Demethylates di-methylated 'Lys-370' of p53/TP53 which prevents interaction of p53/TP53 with TP53BP1 and represses p53/TP53-mediated transcriptional activation. Demethylates and stabilizes the DNA methylase DNMT1. Required for gastrulation during embryogenesis. Component of a RCOR/GFI/KDM1A/HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Effector of SNAI1-mediated transcription repression of E-cadherin/CDH1, CDN7 and KRT8. Required for the maintenance of the silenced state of the SNAI1 target genes E-cadherin/CDH1 and CDN7 (PubMed:20389281).

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Modifications Tables

Relations

Regulator Mechanism target score
+ up-regulates activity img/direct-activation.png demethylation H3-3A 0.2
Publications: 1 Organism: Homo Sapiens
+ up-regulates activity img/direct-activation.png demethylation H3-4 0.2
Publications: 1 Organism: Homo Sapiens
+ up-regulates activity img/direct-activation.png demethylation H3C1 0.2
Publications: 1 Organism: Homo Sapiens
+ down-regulates activity img/direct_inhibition.png dephosphorylation KDM1A 0.478
Publications: 2 Organism: Homo Sapiens
+ up-regulates activity img/direct-activation.png phosphorylation KDM1A 0.323
Publications: 2 Organism: Homo Sapiens
+ up-regulates activity img/direct-activation.png binding, relocalization KDM1A 0.415
Publications: 2 Organism: Homo Sapiens
+ form complex img/form-complex.png binding BHC complex 0.796
Publications: 1 Organism: Homo Sapiens
+ down-regulates quantity by repression img/direct_inhibition.png transcriptional regulation KDM1A 0.268
Publications: 1 Organism: Homo Sapiens
+ down-regulates img/indirect_inhibition.png Epigenetic_regulation 0.7
Publications: 1 Organism: Homo Sapiens
+ form complex img/form-complex.png binding CoREST-HDAC complex 0.74
Publications: 1 Organism: Homo Sapiens
+ down-regulates quantity by repression img/direct_inhibition.png transcriptional regulation KDM1A 0.283
Publications: 1 Organism: Homo Sapiens
+ up-regulates activity img/direct-activation.png binding KDM1A 0.26
Publications: 1 Organism: Homo Sapiens
+ up-regulates activity img/direct-activation.png binding KDM1A 0.954
Publications: 1 Organism: In Vitro
+ up-regulates activity img/direct-activation.png demethylation Histone H3 0.2
Publications: 1 Organism: Homo Sapiens
+ down-regulates activity img/direct_inhibition.png binding KDM1A 0.27
Publications: 1 Organism: Homo Sapiens
+ down-regulates activity img/direct_inhibition.png binding KDM1A 0.704
Publications: 1 Organism: In Vitro
+ up-regulates activity img/direct-activation.png binding KDM1A 0.2
Publications: 1 Organism: Homo Sapiens